Biological AI: Building a Tool-Calling Cellular Simulation

Metabolic processes are messy. In biology, organelles like Mitochondria and Lysosomes don't follow a central "script"; they respond to chemical signals and negotiate resources. When building Cyto Agent , I wanted to mirror this decentralized intelligence using modern LLM agent patterns. In this post, we’ll dive into how to build a real-time cellular simulation powered by a "LangGraph-style" tool-calling orchestrator. The Problem: Scripted vs. Dynamic Intelligence Most simulations use hard-coded